Escorted free energy simulations: improving convergence by reducing dissipation.

نویسندگان

  • Suriyanarayanan Vaikuntanathan
  • Christopher Jarzynski
چکیده

Nonequilibrium, "fast switching" estimates of equilibrium free energy differences DeltaF are often plagued by poor convergence due to dissipation. We propose a method to improve these estimates by generating trajectories with reduced dissipation. Introducing an artificial flow field that couples the system coordinates to the external parameter driving the simulation, we derive an identity for DeltaF in terms of the resulting trajectories. When the flow field effectively escorts the system along a near-equilibrium path, the free energy estimate converges efficiently and accurately. We illustrate our method on a model system and discuss the general applicability of our approach.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Equilibrium free energy differences from nonequilibrium computer simulations: Improving convergence by reducing dissipation

Title of dissertation: Equilibrium free energies from nonequilibrium simulations: Improving convergence by reducing dissipation Suriyanarayanan Vaikuntanathan, Doctor of Philosophy, 2011 Dissertation directed by: Professor Christopher Jarzynski Department of Chemistry and Biochemistry Institute for Physical Science and Technology The estimation of equilibrium free energy differences is an impor...

متن کامل

Escorted free energy simulations.

We describe a strategy to improve the efficiency of free energy estimates by reducing dissipation in nonequilibrium Monte Carlo simulations. This strategy generalizes the targeted free energy perturbation approach [C. Jarzynski, Phys. Rev. E 65, 046122 (2002)] to nonequilibrium switching simulations, and involves generating artificial, "escorted" trajectories by coupling the evolution of the sy...

متن کامل

Influence of Slope and the Number of Steps on Energy Dissipation in Stepped Spillway Using Numerical Model

Recently the stepped spillways have been used as an appropriate solution for energy dissipation. In the present study, Siahbisheh dam spillway is simulated by using Computational Fluid Dynamic (CFD), in which the Mixture method and Reynolds Stresses Model (RSM) turbulence model is used. In the first modeling series the over all steppes slope is constant. The number of the steps is increased to ...

متن کامل

Local Sampling in Steered Monte Carlo Simulations Decreases Dissipation and Enhances Free Energy Estimates via Nonequilibrium Work Theorems.

Configurational freezing (J. Chem. Theory Comput.2011, 7, 582) is a method devised for steered Monte Carlo simulations aimed at improving free energy estimates via nonequilibrium work theorems (see Jarzynski in Phys. Rev. Lett.1997, 78, 2690 and Crooks in J. Stat. Phys.1998, 90, 1481). The basic idea is to limit the sampling to particles located in the region of space where dissipation occurs, ...

متن کامل

Modified multi-dimensional limiting process with enhanced shock stability on unstructured grids

The basic concept of multi-dimensional limiting process (MLP) on unstructured grids is inherited and modified for improving shock stabilities and reducing numerical dissipation on smooth regions. A relaxed version of MLP condition, simply named as weak-MLP, is proposed for reducing dissipation. Moreover, a stricter condition, that is the strict-MLP condition, is proposed to enhance the numerica...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Physical review letters

دوره 100 19  شماره 

صفحات  -

تاریخ انتشار 2008